Techniques of Preparative Zonal and Continuous Flow Ultracentrifugation

Centrifugation is a separation technique based on the properties of the particle in an applied centrifugal field.

Centrifugation techniques

1. Principle

Centrifugation is a separation technique based on the properties of the particle in an applied centrifugal field. Particles which differ in size, shape and density sediment at different rates in a medium held in a tube. The rate of sedimentation depends upon the applied centrifugal field, density and radius of the particle as well as the density and viscosity of the suspending medium. The rate of sedimentation can be expressed as rpm (revolutions per minute) or g (gravitational force). The rate of sedimentation is dependent upon the centrifugal field (G) which is determined by the square of the angular velocity of the rotor ( s ) and radial distance (r) from the axis of rotation, expressed in the equation G = ω ² r

The instrument used to hold the sample and generate the centrifugal force is called the centrifuge. This is accomplished through the use of various rotors of specific diameter. A rotor can hold the sample and spin along its own axis at different speeds to generate centrifugal force.

2. Types of Rotors:

Rotors are important components in a centrifuge and there are several types of rotors. The schematic representation of rotors used in centrifuge is shown in Fig.10.12.

1. Fixed angle rotor: In fixed angle rotor, particles move radially outward under the influence of a centrifugal field. The tubes are held at the angle 20 to 45 degrees. Particles have only a short distance to travel, to form a pellet at the bottom of the tube.

2. Swinging bucket rotor: The swinging bucket rotor, starts off in a vertical position and during acceleration of the rotor swing out to a horizontal position. During centrifugation, the solution in the tube, is aligned perpendicular to the axis of rotation and parallel to the applied centrifugal field, the tube returning to its original position as the rotor slows down.

3. Vertical rotor: Vertical rotor presents the shortest possible path for a particle. In this rotor, the pellet is deposited along the entire length of the tube.

4. Zonal rotor: The zonal rotors may be of the batch or continuous flow type. They are designed to minimize the wall effect that is encountered in swinging-bucket and fixed angle rotors, and to increase sample size.

3. Types of Centrifugation:

Two main centrifugation techniques are in general use

a. Preparative centrifugation: This technique is used for separation, isolation and purification of whole cells, plasma membrane, ribosomes, nucleic acids, and many subcellular organelles.

b. Analytical centrifugation: This technique is used to study the characteristic feature of a pure macromolecule. Specially designed rotors and detector systems are needed to continuously monitor the process of sedimentation of the material in the centrifugal field.

i. Differential centrifugation:

Differential centrifugation is based on the difference in the sedimentation rate of the particles of different size and density. It is used for the isolation of sub-cellular organelles. The centrifugal force is proportional to the radius of the centrifugal head and to the square of angular velocity. Therefore, it is possible to use small rotor heads at very high speeds.

The rotor heads are run in a vacuum. The tube containing the homogenate is held at an angle to the axis. This technique is commonly used for collecting cells or producing subcellular fractions from a tissue homogenate. For example, homogenizing a rat liver at relatively low speed will pellet the larger dense nuclei and centrifugation at higher speed will sediment particles to further lower size (Fig.10.13)

ii. Density gradient centrifugation

This technique was developed by Scientist Brakke in the year 1960, where he proposed three ways through which density gradients may be used.

a. Rate zonal density gradient centrifugation:

This type of centrifugation involves, layering of sample solution on the top of the gradient, where the density continuously increases towards the bottom of the tube. It is used to measure the rate of sedimentation for separation of particles with different sedimentation co-efficient.

b. Isopycnic density gradient centrifugation:

Isopycnic (Equal) density gradient centrifugation depends on the buoyant density of the particle and not on the size and shape of the particle. This centrifugation is used for the separation of similar size particles which differ in their densities

c. Equilibrium iso-density centrifugation:

In equilibrium iso-density centrifugation, the sample is mixed with gradient medium to give a solution of uniform density. The gradient is self-forming during centrifugation. Salts of heavy metals like caesium, sucrose, and silica are used as the gradient material. Comparison of rate zonal density gradient centrifugation and isopycnic gradient centrifugation is represented in Fig.10.14

4. Analytical Ultra centrifugation:

Analytical ultracentrifugation, developed by Svedberg, is a versatile method for the separation of small particles such as particles of 10 microns in size. It can operate safely at about rotor speeds upto 60,000 – 10,00,000 rpm. Protein molecules, under the influence of high centrifugal force can be made to sediment toward one end of a centrifuge tube. The rate of sedimentation for a protein under a certain centrifugal force depends on the density, shape and size of the molecule. It is used to determine the sedimentation co-efficient and molecular weight of the macromolecules in solution.

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11th Biochemistry : Chapter 10 : Biochemical Techniques : Centrifugation techniques: Principle and Types |

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